Welcome to diArk 3.0.

A database for eukaryotic genome and EST sequencing projects.


If you use diArk, please cite:
B. Hammesfahr, F. Odronitz, M. Hellkamp & M. Kollmar (2011) diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338. Open Access Highly Accessed

Do you know?

Zygosaccharomyces rouxii NBRC 110957
Zygosaccharomyces_rouxii_NBRC_110957 Picture Source
Taxonomy:Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Saccharomycotina | Saccharomycetes | Saccharomycetales | Saccharomycetaceae | Zygosaccharomyces
Synonym:Saccharomyces rouxii
Comment:Zygosaccharomyces rouxii, formerly known as Saccharomyces rouxii, is a homothallic diploid yeast. It is salt-tolerant and osmotolerant, features that allow this organism to cause spoilage of foods such as fruit juices, jams, salad dressings, and bakery products.
Ncbi Go to NCBI Taxonomy (4956)
Eol Encyclopedia of life
Wiki Wikipedia

Newest Species and Genome Assemblies in diArk

2018-08-28

Galactomyces_geotrichum_3C
Galactomyces geotrichum 3C v.2.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Galactomyces
Coverage: 95.44 | Contigs: 233 | GC-Content: 47.1% | Bases: 41.0Mbp | Filesize: 39.7MB

2018-08-27

Candida_hollandica
Candida hollandica v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Candida
Contigs: 18 | GC-Content: 48.0% | Bases: 20.0Mbp | Filesize: 19.41MB
Candida_osloensis
Candida osloensis v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Candida
Contigs: 37 | GC-Content: 50.9% | Bases: 23.1Mbp | Filesize: 22.49MB
Yarrowia_alimentaria
Yarrowia alimentaria v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 11 | GC-Content: 49.4% | Bases: 19.8Mbp | Filesize: 19.18MB
Yarrowia_bubula
Yarrowia bubula v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 28 | GC-Content: 46.8% | Bases: 20.6Mbp | Filesize: 20.22MB
Yarrowia_deformans
Yarrowia deformans v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 42 | GC-Content: 50.2% | Bases: 20.8Mbp | Filesize: 20.43MB
Yarrowia_divulgata
Yarrowia divulgata v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 19 | GC-Content: 50.3% | Bases: 21.2Mbp | Filesize: 20.55MB
Yarrowia_galli
Yarrowia galli v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 6 | GC-Content: 49.3% | Bases: 22.7Mbp | Filesize: 22.08MB
Yarrowia_keelungensis
Yarrowia keelungensis v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 39 | GC-Content: 48.2% | Bases: 21.6Mbp | Filesize: 20.94MB
Yarrowia_porcina
Yarrowia porcina v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Contigs: 43 | GC-Content: 44.3% | Bases: 30.0Mbp | Filesize: 29.44MB

Newest Genome Publications in diArk

Saccharomycopsis_fermentans_CBS_7830
Diutina_catenulata_WY3_10_4
Pichia_kudriavzevii_SJP_SNU
Peterozyma_xylosa_NRRL_Y_12939
Saccharomyces_uvarum_U3

Purpose of the Database

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most of them have not been published yet. In addition, many microarray analyses yielded thousands of sequenced EST and cDNA clones. For the researcher interested in single gene analyses (from a phylogenetic, a structural biology or other perspective) it is therefore important to have up-to-date knowledge about the various resources providing primary data. diArk provides comprehensive search modules each with detailed options and three different views of the selected data.
To be up to date with the newest data just use our RSS-Feed on the right side.

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Usage

The web interface has been designed using the next generation internet features (Web 2.0). Thus, the site makes extensive use of Ajax (Asynchronous JavaScript and XML) in order to present the user with a feature rich interface while minimizing the amount of transferred data. To use the database you therefore have to enable javascript and session-cookies.

Note

We have done our best to include all eukaryotic sequencing projects in the world that provide assembled genomic data or a considerable amount of cDNA/EST data. But we are sure that we still miss some. If you are aware of a missing project please contact us.

diArk 3.0 Content Info

Species:6479
References:170
Projects:9048
gen DNA Projects:5213
EST/cDNA Projects:851
Publications:2409
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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