Welcome to diArk 3.0.

A database for eukaryotic genome and EST sequencing projects.


If you use diArk, please cite:
B. Hammesfahr, F. Odronitz, M. Hellkamp & M. Kollmar (2011) diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338. Open Access Highly Accessed

Do you know?

Hepatospora eriocheir GB1
Hepatospora_eriocheir_GB1 Picture Source
Taxonomy:Eukaryota | Opisthokonta | Fungi | Fungi incertae sedis | Microsporidia | Apansporoblastina | Enterocytozoonidae | Hepatospora
Synonym:Endoreticulatus eriocheir
Ncbi Go to NCBI Taxonomy (1081669)
Eol Encyclopedia of life
Wiki Wikipedia
Publication:
et. al. Right (2017)
Environ Microbiol 19, 2077-2089. Down

Newest Species and Genome Assemblies in diArk

2018-04-08

Candida_magnoliae_PYCC_2903
Candida magnoliae PYCC 2903 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Starmerella | Starmerella/Candida clade
Contigs: 1021 | GC-Content: 58.4% | Bases: 9.8Mbp | Filesize: 9.6MB

2018-04-01

Bos_indicus_breed_Gir
Bos indicus breed Gir v.1.0.0 (chromosome)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Bovinae | Bos
Contigs: 30 | GC-Content: 41.8% | Bases: 2616.2Mbp | Filesize: 2573.65MB
Desmodus_rotundus
Desmodus rotundus v.1.0.0 (supercontigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Desmodontinae | Desmodus
Contigs: 342 | GC-Content: 42.1% | Bases: 2001.0Mbp | Filesize: 1980.01MB
Gerris_buenoi
Gerris buenoi v.2.0.0 (supercontigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Gerrinae | Gerris
Coverage: 73.8 | Contigs: 11656 | GC-Content: 32.3% | Bases: 807.0Mbp | Filesize: 944.11MB
Lagenidium_giganteum_MTLA_03
Lagenidium giganteum MTLA 03 v.1.0.0 (contigs)
Taxonomy: Stramenopiles | Oomycetes | Lagenidiales | . . . | Lagenidiaceae | Lagenidium
Contigs: 25721 | GC-Content: 54.5% | Bases: 68.4Mbp | Filesize: 70.92MB
Lagenidium_giganteum_MTLA_03
Lagenidium giganteum MTLA 03 v.1.0.0 (mito)
Taxonomy: Stramenopiles | Oomycetes | Lagenidiales | . . . | Lagenidiaceae | Lagenidium
Contigs: 23 | GC-Content: 29.1% | Bases: 0.1Mbp | Filesize: 0.08MB

2018-03-22

Monascus_ruber_FWB13
Monascus ruber FWB13 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Aspergillaceae | Monascus
Contigs: 24 | GC-Content: 48.9% | Bases: 26.3Mbp | Filesize: 25.44MB

2018-03-20

Corynespora_cassiicola_777AA
Corynespora cassiicola 777AA v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Corynesporascaceae | Corynespora
Coverage: 36 | Contigs: 6640 | GC-Content: 51.8% | Bases: 42.9Mbp | Filesize: 42.15MB
Corynespora_cassiicola_ATI11
Corynespora cassiicola ATI11 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Corynesporascaceae | Corynespora
Coverage: 34 | Contigs: 5367 | GC-Content: 51.9% | Bases: 42.1Mbp | Filesize: 41.19MB

2018-03-15

Bos_indicus_breed_Gir
Bos indicus breed Gir v.1.0.0 (mito)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Bovinae | Bos
Contigs: 1 | GC-Content: 39.5% | Bases: 0.0Mbp | Filesize: 0.02MB

Newest Genome Publications in diArk

Crithidia_bombi
Talaromyces_adpressus_CBS_142503
Talaromyces adpressus CBS 142503
et. al. Right (2018)
Genome Announc 6, e01430-17. Down
Magnaporthe_oryzae_WBKY11
Juglans_mandshurica
Schmidtea_mediterranea_str__S2

Purpose of the Database

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most of them have not been published yet. In addition, many microarray analyses yielded thousands of sequenced EST and cDNA clones. For the researcher interested in single gene analyses (from a phylogenetic, a structural biology or other perspective) it is therefore important to have up-to-date knowledge about the various resources providing primary data. diArk provides comprehensive search modules each with detailed options and three different views of the selected data.
To be up to date with the newest data just use our RSS-Feed on the right side.

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Usage

The web interface has been designed using the next generation internet features (Web 2.0). Thus, the site makes extensive use of Ajax (Asynchronous JavaScript and XML) in order to present the user with a feature rich interface while minimizing the amount of transferred data. To use the database you therefore have to enable javascript and session-cookies.

Note

We have done our best to include all eukaryotic sequencing projects in the world that provide assembled genomic data or a considerable amount of cDNA/EST data. But we are sure that we still miss some. If you are aware of a missing project please contact us.

diArk 3.0 Content Info

Species:6316
References:170
Projects:8882
gen DNA Projects:5048
EST/cDNA Projects:851
Publications:2373
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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