Welcome to diArk 3.0.

A database for eukaryotic genome and EST sequencing projects.


If you use diArk, please cite:
B. Hammesfahr, F. Odronitz, M. Hellkamp & M. Kollmar (2011) diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338. Open Access Highly Accessed

Do you know?

Phytophthora ramorum Pr102
Phytophthora_ramorum_Pr102 Picture Source
Taxonomy:Eukaryota | Stramenopiles | Oomycetes | Peronosporales | Peronosporaceae | Phytophthora
Synonym:Phytophthora sp. ex Parrotia persica
Common:Sudden oak death agent, ramorum blight, sudden oak death
Ncbi Go to NCBI Taxonomy (164328)
Eol Encyclopedia of life
Wiki Wikipedia
Publication:

Newest Species and Genome Assemblies in diArk

2018-05-31

Purpureocillium_lilacinum_36_1
Purpureocillium lilacinum 36 1 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Ophiocordycipitaceae | Purpureocillium
Coverage: 75 | Contigs: 240 | GC-Content: 58.6% | Bases: 37.5Mbp | Filesize: 36.39MB

2018-05-26

Chaenocephalus_aceratus
Chaenocephalus aceratus v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Channichthyidae | Chaenocephalus
Contigs: 114963 | GC-Content: 41.1% | Bases: 622.3Mbp | Filesize: 615.51MB
Cyttopsis_rosea
Cyttopsis rosea v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Cyttopsinae | Cyttopsis
Contigs: 111974 | GC-Content: 43.1% | Bases: 545.3Mbp | Filesize: 539.9MB
Guentherus_altivela
Guentherus altivela v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Ateleopodidae | Guentherus
Contigs: 189411 | GC-Content: 42.2% | Bases: 539.3Mbp | Filesize: 541.73MB
Helostoma_temminkii
Helostoma temminkii v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Helostomatidae | Helostoma
Contigs: 21407 | GC-Content: 39.3% | Bases: 598.5Mbp | Filesize: 582.43MB
Melanogrammus_aeglefinus
Melanogrammus aeglefinus v.1.0.0 (contigs_assembly2)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Gadidae | Melanogrammus
Contigs: 8420 | GC-Content: 46.1% | Bases: 635.6Mbp | Filesize: 632.44MB
Parablennius_parvicornis
Parablennius parvicornis v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Salariinae | Parablennius
Contigs: 66539 | GC-Content: 40.9% | Bases: 596.8Mbp | Filesize: 586.92MB
Polymixia_japonica
Polymixia japonica v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Polymixiidae | Polymixia
Contigs: 92198 | GC-Content: 42.7% | Bases: 553.7Mbp | Filesize: 546.29MB
Rondeletia_loricata
Rondeletia loricata v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Rondeletiidae | Rondeletia
Contigs: 103827 | GC-Content: 42.3% | Bases: 567.5Mbp | Filesize: 560.85MB
Typhlichthys_subterraneus
Typhlichthys subterraneus v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Metazoa | Eumetazoa | . . . | Amblyopsidae | Typhlichthys
Contigs: 84841 | GC-Content: 41.6% | Bases: 554.8Mbp | Filesize: 546.74MB

Newest Genome Publications in diArk

Saccharomyces_uvarum_U3
Hyaena_hyaena
Chlorella_sorokiniana
Metschnikowia_fructicola_AP47
Ambystoma_mexicanum_DD151

Purpose of the Database

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most of them have not been published yet. In addition, many microarray analyses yielded thousands of sequenced EST and cDNA clones. For the researcher interested in single gene analyses (from a phylogenetic, a structural biology or other perspective) it is therefore important to have up-to-date knowledge about the various resources providing primary data. diArk provides comprehensive search modules each with detailed options and three different views of the selected data.
To be up to date with the newest data just use our RSS-Feed on the right side.

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Usage

The web interface has been designed using the next generation internet features (Web 2.0). Thus, the site makes extensive use of Ajax (Asynchronous JavaScript and XML) in order to present the user with a feature rich interface while minimizing the amount of transferred data. To use the database you therefore have to enable javascript and session-cookies.

Note

We have done our best to include all eukaryotic sequencing projects in the world that provide assembled genomic data or a considerable amount of cDNA/EST data. But we are sure that we still miss some. If you are aware of a missing project please contact us.

diArk 3.0 Content Info

Species:6425
References:170
Projects:8993
gen DNA Projects:5158
EST/cDNA Projects:851
Publications:2404
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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