Oryza sativa Japonica group

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

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Taxonomy: Eukaryota | Viridiplantae | Streptophyta | Streptophytina | Embryophyta | Tracheophyta | Euphyllophyta | Spermatophyta | Magnoliophyta | Mesangiospermae | Liliopsida | Petrosaviidae | commelinids | Poales | Poaceae | BOP clade | Oryzoideae | Oryzeae | Oryzinae | Oryza | Oryza sativa Synonym: Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer) Common: Japanese rice (German: Japanischer Reis) Go to NCBI Taxonomy (39947) Encyclopedia of life Wikipedia Projects: Beijing Genomics Institute: Rice Information System e! Ensembl: Oryza sativa GenBank - NIH genetic sequence database: GenBank species TBLASTN GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS Phytozome: Oryza sativa (Rice) The Gene Index Project: DFCI Rice (Oryza sativa) Gene Index Publications: Yamamoto T, Nagasaki H, Yonemaru J et. al. (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11, 267. 10.1186/1471-2164-11-267 Yu J, Wang J, Lin W et. al. (2005) The Genomes of Oryza sativa: a history of duplications. PLoS Biol 3, e38. 10.1371/journal.pbio.0030038 Jantasuriyarat C, Gowda M, Haller K et. al. (2005) Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol 138, 105-15. 10.1104/pp.104.055624 Show all 7 Publications Genome files GenBank - NIH genetic sequence database Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info Chromosome v 1.0.0 2003-09-12 - 42.9 336.6 12 - 29740 Chromosome assembly 2 v 1.0.0 2009-08-06 15.7 43.1 306.1 12 30828 Contigs v 1.0.0 2003-09-12 - 43.8 374.2 35047 - 21 Contigs assembly 02 v 1.0.0 2009-08-06 15.7 43.1 306.1 654543 3 Contigs assembly 03 v 1.0.0 2011-06-01 179 43.2 364.2 64745 - 17 Supercontigs v 1.0.0 2003-09-12 - 43.2 347.4 1424 - 11616 Supercontigs assembly 03 v 1.0.0 2011-06-01 179 43.2 364.2 12 - 31217 e! Ensembl Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info Chromosome v 1.0.0 Contigs v 1.0.0