diArk | species

Species

diArk 3.0 Content

Oryza nivara

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa IL50-13

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group 93-11

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Co39

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group DJ123

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group HR-12

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR64

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR8

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Minghui 63

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group PA64s

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group RP Bio-226

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tadukan

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tetep

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Zhenshan 97

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Japonica group

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group A123

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group HEG4

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Nipponbare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Suijing18

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa KMR3

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa aus subgroup cultivar N 22::IRGC 19379-1 (IRGC 117534)

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryza | Oryza sativa | Oryza sativa Indica Group ]

Oryza nivara [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa IL50-13 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group 93-11 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Co39 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group DJ123 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group HR-12 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR64 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR8 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Minghui 63 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group PA64s [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group RP Bio-226 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tadukan [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tetep [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Zhenshan 97 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Japonica group [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group A123 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group HEG4 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Nipponbare [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Suijing18 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa KMR3 [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa aus subgroup cultivar N 22::IRGC 19379-1 (IRGC 117534) [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Oryza | Oryza sativa | Oryza sativa Indica Group ]

Oryza nivara

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa IL50-13

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group 93-11

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Co39

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group DJ123

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group HR-12

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR64

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group IR8

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Minghui 63

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group PA64s

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group RP Bio-226

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tadukan

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Tetep

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Indica group Zhenshan 97

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa Japonica group

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group A123

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group HEG4

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Nipponbare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa Japonica group Suijing18

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzinae | Oryza | Oryza sativa ]

Oryza sativa KMR3

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryzeae | Oryzinae | Oryza ]

Oryza sativa aus subgroup cultivar N 22::IRGC 19379-1 (IRGC 117534)

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Oryza | Oryza sativa | Oryza sativa Indica Group ]

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Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliopsida \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa f. spontanea
		Go to NCBI Taxonomy (4536)
		Encyclopedia of life
		Wikipedia

Projects:
			GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS



			Journal Supplementary Data: Oryza AA Genomes Database

Publication:

Zhang QJ, Zhu T, Xia EH et. al.

(2014)

Rapid diversification of five Oryza AA genomes associated with rice adaptation.

Proc Natl Acad Sci U S A 111, E4954-E4962.

10.1073/pnas.1418307111

Courtesy of Leo Michels

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliopsida \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Common:	rice (German: Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Projects:
			Beijing Genomics Institute: Rice Information System



			e! Ensembl: Oryza sativa indica group (Oryza indica)



			GenBank - NIH genetic sequence database: GenBank species TBLASTN



			GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS



			The Gene Index Project: DFCI Rice (Oryza sativa) Gene Index

Publications:

Yu J, Wang J, Lin W et. al.

(2005)

The Genomes of Oryza sativa: a history of duplications.

PLoS Biol 3, e38.

10.1371/journal.pbio.0030038

Zhang J, Feng Q, Jin C et. al.

(2005)

Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63.

Plant J 42, 772-80.

10.1111/j.1365-313X.2005.02408.x

Xie K, Zhang J, Xiang Y et. al.

(2005)

Isolation and annotation of 10828 putative full length cDNAs from indica rice.

Sci China C Life Sci 48, 445-51.

Show all 6 Publications Pub

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliopsida \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Gao ZY, Zhao SC, He WM et. al.

(2013)

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.

Proc Natl Acad Sci U S A 110, 14492-14497.

10.1073/pnas.1306579110

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Mahesh HB, Shirke MD, Singh S et. al.

(2016)

Indica rice genome assembly, annotation and mining of blast disease resistance genes.

BMC Genomics 17, 242.

10.1186/s12864-016-2523-7

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Schatz MC, Maron LG, Stein JC et. al.

(2014)

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Genome Biol 15, 506.

10.1186/PREACCEPT-2784872521277375

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Mahesh HB, Shirke MD, Singh S et. al.

(2016)

Indica rice genome assembly, annotation and mining of blast disease resistance genes.

BMC Genomics 17, 242.

10.1186/s12864-016-2523-7

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Schatz MC, Maron LG, Stein JC et. al.

(2014)

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Genome Biol 15, 506.

10.1186/PREACCEPT-2784872521277375

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Zhang J, Chen LL, Xing F et. al.

(2016)

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.

Proc Natl Acad Sci U S A 113, E5163-E5171.

10.1073/pnas.1611012113

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Gao ZY, Zhao SC, He WM et. al.

(2013)

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.

Proc Natl Acad Sci U S A 110, 14492-14497.

10.1073/pnas.1306579110

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Projects:
			International TSA Sequencing Consortium: Oryza sativa Indica group RP Bio-226 TSA Sequencing Consortium



			National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project

Publication:

Reddy MM, Ulaganathan K (2015)

RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226.

Genom Data 6, 112-113.

10.1016/j.gdata.2015.08.025

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Mahesh HB, Shirke MD, Singh S et. al.

(2016)

Indica rice genome assembly, annotation and mining of blast disease resistance genes.

BMC Genomics 17, 242.

10.1186/s12864-016-2523-7

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Mahesh HB, Shirke MD, Singh S et. al.

(2016)

Indica rice genome assembly, annotation and mining of blast disease resistance genes.

BMC Genomics 17, 242.

10.1186/s12864-016-2523-7

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Synonym:	Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica, Oryza sativa aus, Oryza sativa aus cultivar-group, Oryza sativa Aus Group, Oryza sp. Poi-6, Oryza sativa indica (misnomer), Oryza sativa subsp. indica Kato
Common:	Indian rice (German: Indischer Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Publication:

Zhang J, Chen LL, Xing F et. al.

(2016)

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.

Proc Natl Acad Sci U S A 113, E5163-E5171.

10.1073/pnas.1611012113

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer)
Common:	Japanese rice (German: Japanischer Reis)
		Go to NCBI Taxonomy (39947)
		Encyclopedia of life
		Wikipedia

Projects:
			Beijing Genomics Institute: Rice Information System



			e! Ensembl: Oryza sativa



			GenBank - NIH genetic sequence database: GenBank species TBLASTN



			GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS



			Phytozome: Oryza sativa (Rice)



			The Gene Index Project: DFCI Rice (Oryza sativa) Gene Index

Publications:

Yamamoto T, Nagasaki H, Yonemaru J et. al.

(2010)

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

BMC Genomics 11, 267.

10.1186/1471-2164-11-267

Yu J, Wang J, Lin W et. al.

(2005)

The Genomes of Oryza sativa: a history of duplications.

PLoS Biol 3, e38.

10.1371/journal.pbio.0030038

Jantasuriyarat C, Gowda M, Haller K et. al.

(2005)

Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.

Plant Physiol 138, 105-15.

10.1104/pp.104.055624

Show all 7 Publications Pub

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer)
Common:	Japanese rice (German: Japanischer Reis)
		Go to NCBI Taxonomy (39947)
		Encyclopedia of life
		Wikipedia

Publication:

Lu L, Chen J, Robb SMC et. al.

(2017)

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.

Proc Natl Acad Sci U S A 114, E10550-E10559.

10.1073/pnas.1716459114

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer)
Common:	Japanese rice (German: Japanischer Reis)
		Go to NCBI Taxonomy (39947)
		Encyclopedia of life
		Wikipedia

Publication:

Lu L, Chen J, Robb SMC et. al.

(2017)

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.

Proc Natl Acad Sci U S A 114, E10550-E10559.

10.1073/pnas.1716459114

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer)
Common:	Japanese rice (German: Japanischer Reis)
		Go to NCBI Taxonomy (39947)
		Encyclopedia of life
		Wikipedia

Publication:

Schatz MC, Maron LG, Stein JC et. al.

(2014)

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Genome Biol 15, 506.

10.1186/PREACCEPT-2784872521277375

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa
Synonym:	Oryza sativa (japonica cultivar-group), Oryza sativa tropical japonica cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa aromatic cultivar-group, Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa (javanica cultivar-group), Oryza sativa var. javanica Koern., Oryza sativa var. javanica, Oryza sativa subsp. japonica (misnomer), Oryza sativa japonica (misnomer)
Common:	Japanese rice (German: Japanischer Reis)
		Go to NCBI Taxonomy (39947)
		Encyclopedia of life
		Wikipedia

Courtesy of Leo Michels

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza
Common:	rice (German: Reis)
		Go to NCBI Taxonomy (4530)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Oryzoideae \| Oryzeae \| Oryzinae \| Oryza \| Oryza sativa \| Oryza sativa Indica Group
Synonym:	Oryza sativa aus group, Oryza sativa aus cultivar-group, Oryza sativa aus
		Go to NCBI Taxonomy (1736659)
		Encyclopedia of life
		Wikipedia

Species:	6488
References:	170
Projects:	9057
gen DNA Projects:	5222
EST/cDNA Projects:	851
Publications:	2417

GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS