diArk | species

Species

diArk 3.0 Content

Hordeum vulgare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare cultivar Lasa Goumang

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare subsp. vulgare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Barke

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Baronesse

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Bowman

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Haruna Nijo

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Morex

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare cultivar Lasa Goumang [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare subsp. vulgare [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Barke [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Baronesse [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Bowman [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Haruna Nijo [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Morex [ Viridiplantae | Streptophyta | Streptophytina | . . . . . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare cultivar Lasa Goumang

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Triticeae | Hordeinae | Hordeum ]

Hordeum vulgare subsp. vulgare

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Barke

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Baronesse

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Bowman

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Haruna Nijo

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Hordeum vulgare subsp. vulgare cultivar Morex

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Hordeinae | Hordeum | Hordeum vulgare ]

Genome files

Genome files

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Genome files

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliopsida \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum
Common:	barley (German: Gerste)
		Go to NCBI Taxonomy (4513)
		Encyclopedia of life
		Wikipedia

Projects:
			e! Ensembl: Hordeum vulgare



			GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS



			Phytozome: Hordeum vulgare r1 (Barley)

Publication:

Mascher M, Gundlach H, Himmelbach A et. al.

(2017)

A chromosome conformation capture ordered sequence of the barley genome.

Nature 544, 427-433.

10.1038/nature22043

GenBank - NIH genetic sequence database

Type	Version	Date	Compl	Cov	GC %	Size (Mbp)	Contigs	CGR	Illegal Chars	N50 (kbp)	Acc	File	Seq info
Contigs assembly 01	v 1.0.0	2015-02-17		-	59.4	98.1	391258		-	0



Contigs assembly 02	v 1.0.0	2015-02-16		-	59.4	98.1	391258		-	0



Contigs assembly 03	v 2.0.0	2016-10-11		-	44.4	9294.2	72295			156

Phytozome

Type

Version

Date

Compl

Cov

GC %

Size (Mbp)

Contigs

CGR

Illegal Chars

N50 (kbp)

Acc

File

Seq info

Supercontigs

v 1.0.0

2017-05-02

44.5

4570.7

657224

e! Ensembl

Type

Version

Date

Compl

Cov

GC %

Size (Mbp)

Contigs

CGR

Illegal Chars

N50 (kbp)

Acc

File

Seq info

Chromosome

v 2.0.0

2017-12-08

44.4

4274.5

657224

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum
Common:	barley (German: Gerste)
		Go to NCBI Taxonomy (4513)
		Encyclopedia of life
		Wikipedia

Project:

Publication:

Zeng X, Long H, Wang Z et. al.

(2015)

The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau.

Proc Natl Acad Sci U S A 112, 1095-1100.

10.1073/pnas.1423628112

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

Projects:
			GenBank - NIH genetic sequence database: GenBank species TBLASTN



			Gramene: Hordeum vulgare



			The Gene Index Project: DFCI Barley (Hordeum vulgare) Gene Index

Publications:

Munoz-Amatriain M, Eichten SR, Wicker T et. al.

(2013)

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Genome Biol 14, R58.

10.1186/gb-2013-14-6-r58

Mayer KF, Waugh R, Brown JW et. al.

(2012)

A physical, genetic and functional sequence assembly of the barley genome.

Nature 491, 711-716.

10.1038/nature11543

Sato K, Motoi Y, Yamaji N et. al.

(2011)

454 sequencing of pooled BAC clones on chromosome 3H of barley.

BMC Genomics 12, 246.

10.1186/1471-2164-12-246

Show all 4 Publications Pub

GenBank - NIH genetic sequence database

Type

Version

Date

Compl

Cov

GC %

Size (Mbp)

Contigs

CGR

Illegal Chars

N50 (kbp)

Acc

File

Seq info

Contigs

v 1.0.0

2014-05-28

44.0

1781.4

2546226

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

GenBank - NIH genetic sequence database

Type	Version	Date	Compl	Cov	GC %	Size (Mbp)	Contigs	CGR	Illegal Chars	N50 (kbp)	Acc	File	Seq info
Contigs	v 1.0.0	2012-06-08		-	40.6	132.1	110009		-	2



Contigs	v 1.1.0	2012-06-08		-	42.6	1955.4	2742077		-	1

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

GenBank - NIH genetic sequence database

Type	Version	Date	Compl	Cov	GC %	Size (Mbp)	Contigs	CGR	Illegal Chars	N50 (kbp)	Acc	File	Seq info
Contigs	v 1.0.0	2017-12-21		50	43.9	57.3	14137	-		4	-



Mitochondrium	v 1.0.0	2017-12-21		50	44.5	0.1	21	-		5	-

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

GenBank - NIH genetic sequence database

Type

Version

Date

Compl

Cov

GC %

Size (Mbp)

Contigs

CGR

Illegal Chars

N50 (kbp)

Acc

File

Seq info

Contigs

v 1.0.0

2012-06-08

44.8

1757.9

2077901

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

GenBank - NIH genetic sequence database

Type

Version

Date

Compl

Cov

GC %

Size (Mbp)

Contigs

CGR

Illegal Chars

N50 (kbp)

Acc

File

Seq info

Contigs

v 1.0.0

2011-02-04

44.7

28.0

8583

Picture Source

Taxonomy:	Eukaryota \| Viridiplantae \| Streptophyta \| Streptophytina \| Embryophyta \| Tracheophyta \| Euphyllophyta \| Spermatophyta \| Magnoliophyta \| Mesangiospermae \| Liliopsida \| Petrosaviidae \| commelinids \| Poales \| Poaceae \| BOP clade \| Pooideae \| Triticodae \| Triticeae \| Hordeinae \| Hordeum \| Hordeum vulgare
Synonym:	Hordeum distichon, Hordeum distichum, Hordeum vulgare distichum, Hordeum vulgare var. distichum
Common:	barley, two-rowed barley (German: Saat-Gerste)
		Go to NCBI Taxonomy (112509)
		Encyclopedia of life
		Wikipedia

GenBank - NIH genetic sequence database

Type	Version	Date	Compl	Cov	GC %	Size (Mbp)	Contigs	CGR	Illegal Chars	N50 (kbp)	Acc	File	Seq info
Contigs	v 1.0.0	2012-06-08		-	44.4	1817.7	2670738		-	1



Contigs assembly 02	v 1.0.0	2013-04-16		-	44.5	1628.6	2280908		-	1

Species:	6488
References:	170
Projects:	9057
gen DNA Projects:	5222
EST/cDNA Projects:	851
Publications:	2417

GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS