Publication details
Condon BJ, Leng Y, Wu D, Bushley KE, Ohm RA, Otillar R, Martin J, Schackwitz W, Grimwood J, Mohdzainudin N, Xue C, Wang R, Manning VA, Dhillon B, Tu ZJ, Steffenson BJ, Salamov A, Sun H, Lowry S, Labutti K, Han J, Copeland A, Lindquist E, Barry K, Schmutz J, Baker SE, Ciuffetti LM, Grigoriev IV, Zhong S, Turgeon BG
Abstract: The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary metabolism genes, and small secreted protein (SSP) candidate effector encoding genes with a view towards pinpointing structural elements and gene content associated with specificity of these closely related fungi to different cereal hosts. Whole-genome alignment shows that three to five percent of each genome differs between strains of the same species, while a quarter of each genome differs between species. On average, SNP counts among field isolates of the same C. heterostrophus species are more than 25x higher than those between inbred lines and 50x lower than SNPs between Cochliobolus species. The suites of nonribosomal peptide synthetase (NRPS), polyketide synthase (PKS), and SSP-encoding genes are astoundingly diverse among species but remarkably conserved among isolates of the same species, whether inbred or field strains, except for defining examples that map to unique genomic regions. Functional analysis of several strain-unique PKSs and NRPSs reveal a strong correlation with a role in virulence.
Cochliobolus heterostrophus C4
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporineae | Pleosporaceae | Bipolaris ]
Picture Source
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris |
Synonym: | Heliminthosporium maydis, Helminthosporium maydis, Drechslera maydis, Bipolaris maydis ATCC 48331, Cochliobolus heterostrophus ATCC 48331 |
Comment: | Filamentous Fungi |
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Go to NCBI Taxonomy (5016) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
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| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publications: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
Ohm RA, Feau N, Henrissat B et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2012)
PLoS Pathog 8, e1003037.
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Cochliobolus heterostrophus C5
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporaceae | Bipolaris | Bipolaris maydis ]
Picture Source
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris | Bipolaris maydis |
Synonym: | Heliminthosporium maydis, Helminthosporium maydis, Drechslera maydis, Bipolaris maydis C5, Cochliobolus heterostrophus ATCC 48332 |
Comment: | Filamentous Fungi |
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Go to NCBI Taxonomy (701091) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
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| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publications: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
Ohm RA, Feau N, Henrissat B et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2012)
PLoS Pathog 8, e1003037.
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporineae | Pleosporaceae | Bipolaris ]
Courtesy of James Lindsey
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris |
Anamorph: | Bipolaris sorokiniana |
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Go to NCBI Taxonomy (45130) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
|
| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publications: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
Ohm RA, Feau N, Henrissat B et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2012)
PLoS Pathog 8, e1003037.
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Setosphaeria turcica Et28A
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporaceae | Exserohilum | Exserohilum turcicum ]
Courtesy of Ettl
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Exserohilum | Exserohilum turcicum |
Anamorph: | Exserohilum turcicum, Helminthosporium turcicum |
Synonym: | Trichometasphaeria turcica Luttrell |
Common: | northern corn leaf blight (German: Turcicum-Blattfleckenkrankheit) |
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Go to NCBI Taxonomy (671987) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
|
| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publications: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
Ohm RA, Feau N, Henrissat B et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2012)
PLoS Pathog 8, e1003037.
|
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Cochliobolus carbonum 26-R-13
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporaceae | Bipolaris | Bipolaris zeicola ]
Courtesy of König
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris | Bipolaris zeicola |
Anamorph: | Bipolaris zeicola |
Synonym: | Helminthosporium zeicola, Helminthosporium carbonum, Drechslera carbonum |
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Go to NCBI Taxonomy (930089) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
|
| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publication: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
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Bipolaris oryzae ATCC 44560
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporaceae | Bipolaris | Bipolaris oryzae ]
Picture Source
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris | Bipolaris oryzae |
Synonym: | Luttrellia oryzae, Helminthosporium oryzae, Drechslera oryzae, Cochliobolus miyabeanus |
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Go to NCBI Taxonomy (930090) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
|
| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publication: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
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Cochliobolus victoriae FI3
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[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Pleosporaceae | Bipolaris | Bipolaris victoriae ]
Picture Source
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Taxonomy: | Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | dothideomyceta | Dothideomycetes | Pleosporomycetidae | Pleosporales | Pleosporineae | Pleosporaceae | Bipolaris | Bipolaris victoriae |
Synonym: | Drechslera victoriae, Bipolaris victoriae |
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Go to NCBI Taxonomy (930091) |
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| ![Encyclopedia of life Eol](/images/icons/eol.png?1361881497) |
Encyclopedia of life |
|
| ![Encyclopedia of life Wiki](/images/icons/wiki.png?1361881497) |
Wikipedia |
Publication: |
Condon BJ, Leng Y, Wu D et. al. ![Click to show/hide full author list. Right](/images/icons/right.png?1361881497)
( 2013)
PLoS Genet 9, e1003233.
|
|